Philipp Peters, PhD

2013	PhD in Cheminformatics at the University of Southern Denmark. My advisors were Daniel Merkle and Rolf Fagerberg, and the title of my thesis was "Exploring Chemical Networks Using Declarative and Analytical Methods".
2010	Diploma in Biomathematics at the University of Greifswald, Germany. My advisors were Stefan Funke and Jörg Bernhardt, and the title of my thesis was "Development of data / image evaluation to integrate 3D-gelelectrophoresis into high-throughput-environments".

Publications in Scientific Journals

3.	Koczka K¹, Peters P ¹, Ernst W, Himmelbauer H, Nika L, Grabherr R. Comparative transcriptome analysis of a Trichoplusia ni cell line reveals distinct host responses to intracellular and secreted protein products expressed by recombinant baculoviruses. Journal of Biotechnology, Volume 270, pp. 61–69, March 2018 ¹ Authors contributed equally to this work.
2.	Fagerberg R, Flamm C, Merkle D, Peters P, Stadler PF. On the Complexity of Reconstructing Chemical Reaction Networks. Mathematics in Computer Science, September 2013, Volume 7, Issue 3, pp. 275-292 (article on arxiv)
1.	Fagerberg R, Flamm C, Merkle D, Peters P. Exploring Chemistry Using SMT. Proceedings of the 18th International Conference on Principles and Practice of Constraint Programming (CP 2012), M. Milano (eds.), Springer-Verlag Berlin Heidelberg, LNCS 7514, pp. 900-915

Posters and Conferences

3.	Peters P, Stralis Pavese N, Himmelbauer H, Dohm JC. Benchmarking of long-read correction methods. German Conference on Bioinformatics (September 2018)
2.	Dohm JC, Peters P, Minoche AE, Postel U, Kraft T, Schulz B, Schmidt T, Weisshaar B, Himmelbauer H. Genomics and transcriptomics of the genus Beta using short and long sequencing reads. Plant Genome Evolution Conference, Amsterdam, The Netherlands (Sep 2015)
1.	Fagerberg R, Christoph Flamm C, Merkle D, Peters, P. Exploring Chemistry with SMT. 18th International Conference on Principles and Practice of Constraint Programming (CP2012), Quebec City, Canada

Teaching

Winter 2018	Introduction to Algorithms in Bioinformatics	University of Natural Resources and Life Sciences, Vienna
Summer 2018	Sequencing data analysis: Introduction to Genome assembly and RNA-Seq Data Analysis	University of Natural Resources and Life Sciences, Vienna
Winter 2016/17 & 2017/18	Instructional Course IVB - Next-generation sequencing Introduction to RNA-Seq Data Analysis	University of Natural Resources and Life Sciences, Vienna
Summer 2017	Sequencing data analysis Introduction to RNA-Seq Data Analysis	University of Natural Resources and Life Sciences, Vienna
Spring 2012	Introduction to Integer Linear Programming	Syddansk Universitet, Odense
Fall 2010-2012	Introduction to Programming	Syddansk Universitet, Odense
12/2006 - 07/2008	Statistics/Stochastics for psychologists and biologists	University of Greifswald

Contact

Phone:	+43 1 47654 79153
Mail:	Philipp.Peters
Reality:	MUG II, Room 06/03, Muthgasse 18, 1190 Vienna, Austria